Package: BisRNA 0.2.2

BisRNA: Analysis of RNA Cytosine-5 Methylation

Bisulfite-treated RNA non-conversion in a set of samples is analysed as follows : each sample's non-conversion distribution is identified to a Poisson distribution. P-values adjusted for multiple testing are calculated in each sample. Combined non-conversion P-values and standard errors are calculated on the intersection of the set of samples. For further details, see C Legrand, F Tuorto, M Hartmann, R Liebers, D Jakob, M Helm and F Lyko (2017) <doi:10.1101/gr.210666.116>.

Authors:C Legrand

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BisRNA.pdf |BisRNA.html✨
BisRNA/json (API)

# Install 'BisRNA' in R:
install.packages('BisRNA', repos = c('https://carinelegrand.r-universe.dev', 'https://cloud.r-project.org'))

Peer review:

Datasets:
  • Bisdata1 - Synthetic sample 1 of RNA bisulfite sequencing
  • Bisdata2 - Synthetic sample 2 of RNA bisulfite sequencing
  • Bisdata3 - Synthetic sample 3 of RNA bisulfite sequencing

On CRAN:

This package does not link to any Github/Gitlab/R-forge repository. No issue tracker or development information is available.

1.30 score 20 scripts 241 downloads 1 mentions 6 exports 1 dependencies

Last updated 7 years agofrom:37e5fae7c3. Checks:OK: 7. Indexed: yes.

TargetResultDate
Doc / VignettesOKNov 15 2024
R-4.5-winOKNov 15 2024
R-4.5-linuxOKNov 15 2024
R-4.4-winOKNov 15 2024
R-4.4-macOKNov 15 2024
R-4.3-winOKNov 15 2024
R-4.3-macOKNov 15 2024

Exports:class.BisXPfisher.methodread.BisXPRNAmeth.poisson.parRNAmeth.poisson.testsamples.combine

Dependencies:MASS